Index

A

alphas (src.interpolation.Interpolation attribute) (src.interpolation.NormalInterpolation attribute)

C

calculate_cum_length() (src.matrix.Hic method) chrom_num (src.matrix.Matrix attribute)

construct_integrated_matrix() (src.interpolation.Interpolation method) cooler (src.matrix.Hic attribute)

H

Hic (class in src.matrix) Hic.Hic (class in src.matrix)

HistoneMark (class in src.matrix) HistoneMark.HistoneModification (class in src.matrix)

I

integrated_matrix (src.interpolation.Interpolation attribute) (src.interpolation.NormalInterpolation attribute) interpolate_latent_spaces() (src.interpolation.InterpolationInLatentSpace method) interpolate_predicted_img() (src.interpolation.NormalInterpolation method) interpolated_submatrices (src.interpolation.Interpolation attribute) (src.interpolation.NormalInterpolation attribute)

Interpolation (class in src.interpolation) (module) Interpolation.Interpolation (class in src.interpolation) InterpolationInLatentSpace (class in src.interpolation) InterpolationInLatentSpace.InterpolationInLatentSpace (class in src.interpolation)

L

latent_spaces (src.matrix.Matrix attribute)

M

mark_df (src.matrix.HistoneMark attribute) Matrix (class in src.matrix)

matrix (module) (src.matrix.Matrix attribute) Matrix.Matrix (class in src.matrix)

N

NormalInterpolation (class in src.interpolation)

NormalInterpolation.InterpolationInLatentSpace (class in src.interpolation)

P

plot_distribution_matrix() (src.matrix.Matrix method) plot_integrated_matrix() (src.interpolation.Interpolation method) plot_interpolated_submatrices() (src.interpolation.Interpolation method)

plot_matrix() (src.matrix.Matrix method) plot_sub_matrices() (src.matrix.Matrix method) predicted_sub_matrices (src.matrix.Matrix attribute)

R

resolution (src.matrix.Matrix attribute)

S

set_decoded_latent_spaces() (src.interpolation.InterpolationInLatentSpace method) set_matrix() (src.matrix.Hic method) (src.matrix.HistoneMark method) set_predicted_latent_spaces() (src.matrix.Matrix method) set_predicted_sub_matrices() (src.matrix.Matrix method)

set_sub_matrices() (src.matrix.Matrix method) side (src.matrix.Matrix attribute) src.interpolation (module) src.matrix (module) sub_matrices (src.matrix.Matrix attribute)

T

total_sub_matrices (src.matrix.Matrix attribute)

W

white_sub_matrices_ind (src.matrix.Matrix attribute)

write_predicted_sparse_matrix() (src.interpolation.Interpolation method) write_sparse_matrix() (src.matrix.Matrix method)